To download the data, execute the Download notebook (notebooks related to the text will be shown on the top of each chapter). Note that this will get approximately 50 GB of data. You will need sufficient disk space and and good internet connection.
The data will be stored in the
raw directory along the
Open a shell and have a look at the vcf file, use a tool like
the file is compressed. Do not uncompress it.
tabix. Note that partial
downloads of VCF files are possible * An equivalent HDF5 file
Talk about indexing the partial file.